number of cross overs per chromosome 1 - arabidopsis

Load libraries and the data

…

…

Arabidopsis recombination landscape data is published in the following manuscript
http://www.nature.com/hdy/journal/v108/n4/full/hdy201195a.html.

…

Supplemental information from above manuscript is downloaded and is in the following folder recombination_landscape

…

box plot of number of cross overs in progeny of different parental crosses of arabidopsis

## No id variables; using all as measure variables

## Warning: Removed 893 rows containing non-finite values (stat_boxplot).

…

…

fitting distribtuion to number of cross overs per chromosome

## Warning: package 'fitdistrplus' was built under R version 3.2.3

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

…

…

fitting distribtuion to number of cross overs per chromosome

…

…

qq plots using fitted distributions